V4 Linux Software
From Cornell CAC Documentation
Issue rpm -qa on a linux login node to list all the RPMs installed.
| Package and Version | Location | Software Type | Login Nodes | Compute Nodes |
|---|---|---|---|---|
| Abaqus 6.7-1 | /opt/abaqus | Finite element analysis | yes | yes |
| Adobe Reader 8 | /opt/Adobe | Utility - view/print PDF files | yes | no |
| APPSPACK 5.0.1 | /cac/contrib/appspack-5.0.1 | Optimization | yes | yes |
| BLAS (Basic Linear Algebra Subprograms) | /usr/lib64 (or use Intel MKL) | Library - numerical | yes | yes |
| Eclipse | /opt/eclipse | Integrated development environment | yes | no |
| FFTW2 - 2.1.5 | /cac/contrib/fftw-2.1.5 | Library - numerical | yes | yes |
| FFTW3 - 3.1.2 | /cac/contrib/fftw-3.1.2 | Library - numerical | yes | yes |
| Firefox 3 (latest) | /usr/local/bin/firefox | Web browser | yes | yes |
| gcc, GNU C/C++ compiler 4.1.2 (default) | /usr/bin | Compiler | yes | yes |
| gcc, GNU C/C++ compiler 4.3.1 | /opt/gcc-4.3.1/bin | Compiler | yes | yes |
| gfortran, GNU Fortran 95 compiler 4.1.2 (default) | /usr/bin | Compiler | yes | yes |
| gfortran, GNU Fortran 95 compiler 4.3.1 | /opt/gcc-4.3.1/bin | Compiler | yes | yes |
| Globus Toolkit 4.2.1 | /opt/globus | Grid tools | yes | no |
| GSL, GNU Scientific Library 1.12 | /cac/contrib/gsl-1.12 | Library - mathematical | yes | yes |
| icc, Intel C/C++ compiler 10.1 | /opt/intel/cce | Compiler | yes | no |
| ifort, Intel Fortran compiler 10.1 | /opt/intel/fce | Compiler | yes | no |
| Intel Math Kernel Library (MKL) 10.0 | /opt/intel/mkl | Library - numerical and mathematical | yes | no |
| Intel MPI Library 3.1 | /opt/intel/mpi | Message Passing Interface | yes | no |
| Java 1.6 SDK | /usr/java/default | Java Development Kit | yes | no |
| LAPACK | /usr/lib64 (or use Intel MKL) | Library - numerical | yes | yes |
| Mathematica 6 | /opt/Mathematica | Numerical computing and computer algebra | yes | no |
| MATLAB 7.5.0 (R2007b) | /opt/matlab-7.5 | Numerical computing | yes | no |
| MPICH2 | /opt/mpich2 | Message Passing Interface | yes | yes |
| Octave 3.0 | /usr/bin | Numerical computing | yes | yes |
| OpenMPI 1.2.6 | /opt/openmpi | Message Passing Interface | yes | yes |
| OpenOffice.org 2.4 | /opt/openoffice.org2.4 | Office application suite | yes | no |
| Python 2.5.2 | /opt/python | Programming language | yes | yes |
| Rocks Bio Roll 5.0 - HMMER, NCBI BLAST, ClustalW, EMBOSS, Glimmer, Fasta, MrBayes, Phylip, T_Coffee, MPI-Blast, GROMACS, Bioperl, Biopython | /opt/Bio | Bioinformatics application suite | yes | yes |
| Subversion (svn) 1.5 | /opt/CollabNet_Subversion | Subversion revision control system | yes | no |
| UberFTP | /opt/uberftp | GridFTP client | yes | no |
